Do a search in the Tech Section - this has been discussed a lot here.
Some, (like me) used the convenient repair plates, others with more skill used large washers.
Some have mounted the repair plates over the holes, others have cut and mounted them flush. The guide pin holes provide a good line up point for the mid points, the rear edge of the rails for the rear holes.
2012 Mustang Boss 302 #1918, Competition Orange. FGF replacement 2006 Mustang V6 Pony, Vista Blue. Factory ordered. 2019 BMW X3 (Titled to the wife, but I'm always driving it for her. So I'm claiming it) Old projects, gone but not forgotten: 1967 FB 400, original CA car. After 22 years of work, trashed by the guy who was supposed to paint it. I had to sell it. 1980 Turbo Trans Am 1970 Mustang fastback, 351C 4Bbl, auto 1988 Mustang GT, 5 speed 1983 F-150 4x4, built 302 1994 Chevy K2500 HD 4x4, 454 TBI
