I am going to find someone local who knows what they are doing with Q-jets and have them set it up. The car is running at about 98% now with all the things I have done over the last few days (thanks to all of your suggestions).
There is just a SLIGHT hint of a break up issue and that is ONLY at around 5k. As long as I stay lower than that with the RPMs the car runs awesome. None of the other issues now exists.
Little by little the kinks are getting worked out. For my next step I am pulling my front bumper and grills this w/e and installing the new ones my wife got me for Christmas.