So I got the glass adjusted pretty close last night. The front of the glass fits and aligns nicely. I'd like to see the top of the glass a little higher. It is in contact with the weather strip and is sealed, but I'd like to see it 1/8" higher. Unfortunately, it's as high as it can go. I even had to pull out the front and rear stops to get it to go that high. The cross bar that bolts to the glass is actually working as a stop when it hits the bottom of the bracket on the "fuzzies".
It seems like it will work this way, but something is obviously not right. It almost seems like the glass is too short, the door is to low, or the convertible top is too high. The top of the door is aligned well with the body, and the glass on the other side fits fine, so I feel like the top is not the cause. Leads me to believe it might be an issue with the glass, or may the top/body are tweaked.