Probably a longshot but you can steal a little up and down adjustment on the top frame by adjusting the Allen set screw stop at the first joint back from the front, just a little. The way we checked door and trunk seals on new cars at the dealer that needed adjustments was to use a crisp dollar bill and it should be able to be pulled out with the door closed but be a firm pull. You also check it in all different spots. One other idea is that door glass factory or aftermarket?.