Was the clip attached to the body or to the transmission/engine?
And, for the headlight/parking light/alternator harness on the driver's side--there are two plastic tabs to support that harness between the inner and outer fenders. Do the tabs go into holes in the edge of the outer fender or are there holes in the inner fender to insert the tabs to hold that harness? We have new inner fenders, so I can't tell where those plastic tabs were inserted, but I noticed that there are holes through the edge of the outer fender (one near the hood hinge bolt and one 6" ahead of the front bolt that attaches the inner and outer together) that look like they are for that purpose. I'll post pictures if necessary.